SMTL ID : 7lj9.1

Structure of human ATP citrate lyase in complex with acetyl-CoA and oxaloacetate

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

5 x OAA: OXALOACETATE ION(Non-covalent)

OAA.1: 6 residues within 4Å: Chain A: H.900, V.904, F.935, D.1026, R.1065 Chain B: R.1085 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.904, A:F.935 Salt bridges: A:R.1065, B:R.1085 OAA.2: 8 residues within 4Å: Chain A: R.1085 Chain B: H.900, V.904, F.935, G.936, D.1026, F.1061, R.1065 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.935 Hydrogen bonds: B:G.936, B:R.1065, B:R.1065 Salt bridges: B:H.900, A:R.1085 OAA.3: 8 residues within 4Å: Chain C: H.900, V.904, R.934, F.935, G.936, D.1026, R.1065 Chain D: R.1085 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:V.904, C:F.935 Hydrogen bonds: C:G.936, C:R.1065 Salt bridges: C:H.900, D:R.1085 OAA.5: 6 residues within 4Å: Chain D: A.310, N.346, F.347, T.348, R.507 Ligands: ACO.4 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:N.346 Hydrogen bonds: D:N.346, D:F.347, D:T.348, D:R.507 OAA.6: 7 residues within 4Å: Chain C: R.1085 Chain D: V.904, F.935, G.936, D.1026, F.1061, R.1065 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:F.935 Hydrogen bonds: D:G.936, D:R.1065 Salt bridges: D:H.900, C:R.1085

1 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.4: 18 residues within 4Å: Chain B: K.964, L.969, I.970, I.973, K.1017, K.1018, L.1021 Chain D: F.533, F.572, A.573, S.574, R.576, S.577, I.597, E.599, T.625, G.665 Ligands: OAA.5 12 PLIP interactions: 5 interactions with chain B, 7 interactions with chain D Hydrogen bonds: B:I.970, B:I.970, D:S.574, D:S.574, D:S.577, D:E.599 Salt bridges: B:K.964, B:K.1017, B:K.1018, D:R.576 Hydrophobic interactions: D:F.572, D:E.599

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, X. et al., Reply to: Acetyl-CoA is produced by the citrate synthase homology module of ATP-citrate lyase. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-03-31

Peptides

ATP-citrate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ATP-citrate synthase

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