SMTL ID : 7ljp.3 (2 other biounits)

Structure of Thermotoga maritima SmpB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.1: 5 residues within 4Å: Chain A: G.40, T.41, K.44, Y.75, V.80 No protein-ligand interaction detected (PLIP) DIO.2: 5 residues within 4Å: Chain A: C.58, F.60, V.105, T.111, I.112 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.111, A:I.112 Water bridges: A:F.60 DIO.3: 2 residues within 4Å: Chain A: H.94, K.95 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.95

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.96, R.100 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.96, A:R.100 SO4.5: 2 residues within 4Å: Chain A: R.59, K.61 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.59, A:K.61

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: V.6, G.8, Y.23, L.115, K.116, E.128 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.23, A:K.116 Water bridges: A:G.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chan, C.W. et al., Crystal structure of Thermotoga maritima SmpB reveals its C-terminal tail domain in a helical conformation mimicking that of a ribosome-bound state. To Be Published

Release Date

2022-02-09

Peptides

SsrA-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

SsrA-binding protein

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