SMTL ID : 7lm0.1

Crystal structure of GenB3 in complex with PLP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-dimer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 9 residues within 4Å: Chain A: T.86, R.91, V.109, F.110, Y.263, T.273, R.274 Chain B: Y.23, D.24 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.91, A:R.91, A:F.110, A:T.273 Water bridges: A:Y.263, A:T.273, A:T.273

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.2: 14 residues within 4Å: Chain A: T.113, G.114, S.115, Y.139, H.140, G.141, S.187, D.215, V.217, Y.218, K.242 Chain B: G.270, T.271, Y.272 12 PLIP interactions: 10 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.139, A:V.217, A:Y.218, A:K.242 Hydrogen bonds: A:G.114, A:S.115, B:T.271 Water bridges: A:T.113, A:T.113, B:Y.272 Salt bridges: A:K.242 pi-Stacking: A:Y.139 PLP.3: 14 residues within 4Å: Chain A: G.270, T.271, Y.272 Chain B: T.113, G.114, S.115, Y.139, H.140, G.141, S.187, D.215, V.217, Y.218, K.242 15 PLIP interactions: 12 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:Y.139, B:V.217, B:Y.218, B:K.242 Hydrogen bonds: B:G.114, B:S.115, A:T.271 Water bridges: B:S.115, B:S.115, B:S.241, B:S.241, A:G.270, A:Y.272 Salt bridges: B:K.242 pi-Stacking: B:Y.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bury, P.S. et al., Crystal structure of GenB4 in complex with external aldimine of PLP-sisomicin. Acs Catalysis (2021)

Release Date

2021-09-22

Peptides

C-6' aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C-6' aminotransferase