SMTL ID : 7loa.1

T4 lysozyme mutant L99A in complex with 3-fluoroiodobenzene

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.07 Å

Oligo State

monomer

Ligands

1 x Y7V: 1-fluoranyl-3-iodanyl-benzene(Non-covalent)

Y7V.1: 10 residues within 4Å: Chain A: I.78, L.84, V.87, Y.88, A.99, M.102, V.103, V.111, L.118, F.153 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.87, A:Y.88, A:A.99, A:V.111, A:L.118

3 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 6 residues within 4Å: Chain A: G.30, H.31, L.32, D.70, F.104 Ligands: TRS.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.32 BME.3: 2 residues within 4Å: Chain A: N.68, D.72 No protein-ligand interaction detected (PLIP) BME.4: 1 residues within 4Å: Chain A: K.19 No protein-ligand interaction detected (PLIP)

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.5: 8 residues within 4Å: Chain A: E.11, D.20, T.26, G.30, L.32, F.104, Q.105 Ligands: BME.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.11, A:L.32, A:Q.105, A:R.145 Water bridges: A:E.11, A:Y.18, A:D.20, A:D.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamenik, A.S. et al., Energy penalties enhance flexible receptor docking in a model cavity. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-05-19

Peptides

Lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme

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