SMTL ID : 7lp1.1

Structure of Nedd4L WW3 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

3 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 4 residues within 4Å: Chain A: A.15, P.16, N.17, W.32 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.17 NO3.2: 2 residues within 4Å: Chain A: H.25, K.28 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.25, A:K.28 NO3.3: 2 residues within 4Å: Chain A: R.36, L.37 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: W.10, D.24, T.27, T.29, T.30, T.31 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.24, A:T.27, A:T.29 GOL.5: 3 residues within 4Å: Chain A: M.12, R.13, I.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.13, A:R.13 Water bridges: A:M.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rheinemann, L. et al., Interactions between AMOT PPxY motifs and NEDD4L WW domains function in HIV-1 release. J.Biol.Chem. (2021)

Release Date

2021-07-28

Peptides

E3 ubiquitin-protein ligase NEDD4-like: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase NEDD4-like