SMTL ID : 7lp2.3 (2 other biounits)

Structure of Nedd4L WW3 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.19, R.20, T.21 Chain B: H.3 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:H.3 Hydrogen bonds: A:T.21, A:T.21 SO4.2: 2 residues within 4Å: Chain A: Q.1, P.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.1, A:Q.1 SO4.3: 3 residues within 4Å: Chain A: H.3, M.4, S.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.4, A:S.9 Water bridges: A:S.9 Salt bridges: A:H.3 SO4.5: 3 residues within 4Å: Chain A: R.20 Chain B: H.3, R.4 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Salt bridges: A:K.18, A:R.20, B:H.3 Hydrogen bonds: B:R.4

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: P.2, H.3, M.4, P.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rheinemann, L. et al., Interactions between AMOT PPxY motifs and NEDD4L WW domains function in HIV-1 release. J.Biol.Chem. (2021)

Release Date

2021-07-28

Peptides

E3 ubiquitin-protein ligase: A
Angiomotin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

E3 ubiquitin-protein ligase

Angiomotin

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