- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ALA: ALANINE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.2: 6 residues within 4Å:- Chain A: A.22, V.23, N.27, T.254, N.286
- Ligands: ALA.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.24, A:N.27, A:T.254, A:N.286
NA.3: 6 residues within 4Å:- Chain A: G.20, V.23, G.24, A.351, T.354, S.355
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.20
NA.10: 6 residues within 4Å:- Chain B: A.22, V.23, N.27, T.254, N.286
- Ligands: ALA.9
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.24, B:N.27, B:N.27, B:N.286
NA.11: 6 residues within 4Å:- Chain B: G.20, V.23, G.24, A.351, T.354, S.355
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.354, B:T.354
- 10 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
BOG.4: 7 residues within 4Å:- Chain A: L.52, L.53, P.445, R.446, I.447, Y.448, V.451
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.53, A:I.447, A:Y.448, A:V.451
- Hydrogen bonds: A:R.446
BOG.5: 3 residues within 4Å:- Chain A: I.120, F.167, I.170
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.120, A:F.167, A:F.167, A:I.170, A:I.170
BOG.6: 7 residues within 4Å:- Chain A: P.164, S.165, L.166, Y.169, H.391, F.395
- Ligands: BOG.7
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:P.164
BOG.7: 6 residues within 4Å:- Chain A: K.163, F.395
- Chain B: M.476, W.484
- Ligands: BOG.6, BOG.8
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.395, A:F.395
- Hydrogen bonds: A:K.163, A:K.163, B:M.476
- Salt bridges: A:K.163
BOG.8: 8 residues within 4Å:- Chain A: I.161, H.391, F.395
- Chain B: E.477, W.481, W.484, F.488
- Ligands: BOG.7
9 PLIP interactions:5 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:I.161, A:I.161, A:F.395, B:W.484, B:F.488
- Hydrogen bonds: A:E.159, B:E.477, B:W.484
- Salt bridges: A:K.163
BOG.12: 7 residues within 4Å:- Chain B: L.52, L.53, P.445, R.446, I.447, Y.448, V.451
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.53, B:I.447, B:Y.448, B:V.451
- Hydrogen bonds: B:R.446
BOG.13: 3 residues within 4Å:- Chain B: I.120, F.167, I.170
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:I.120, B:F.167, B:F.167, B:I.170, B:I.170
BOG.14: 7 residues within 4Å:- Chain B: P.164, S.165, L.166, Y.169, H.391, F.395
- Ligands: BOG.15
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:P.164
BOG.15: 6 residues within 4Å:- Chain A: M.476, W.484
- Chain B: K.163, F.395
- Ligands: BOG.14, BOG.16
6 PLIP interactions:1 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:M.476, B:K.163, B:K.163
- Hydrophobic interactions: B:F.395, B:F.395
- Salt bridges: B:K.163
BOG.16: 8 residues within 4Å:- Chain A: E.477, W.481, W.484, F.488
- Chain B: I.161, H.391, F.395
- Ligands: BOG.15
10 PLIP interactions:4 interactions with chain A, 6 interactions with chain B- Hydrophobic interactions: A:W.484, A:F.488, B:I.161, B:I.161, B:F.395
- Hydrogen bonds: A:E.477, A:W.484, B:E.159, B:E.159
- Salt bridges: B:K.163
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aguilar, J.I. et al., Psychomotor impairments and therapeutic implications revealed by a mutation associated with infantile Parkinsonism-Dystonia. Elife (2021)
- Release Date
- 2021-05-19
- Peptides
- Na(+):neurotransmitter symporter (Snf family): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ALA: ALANINE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 10 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aguilar, J.I. et al., Psychomotor impairments and therapeutic implications revealed by a mutation associated with infantile Parkinsonism-Dystonia. Elife (2021)
- Release Date
- 2021-05-19
- Peptides
- Na(+):neurotransmitter symporter (Snf family): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A - Membrane
-
We predict this structure to be a membrane protein.