SMTL ID : 7lrh.1 (1 other biounit)

C-terminal domain of RibD from Brucella abortus (5-amino-6-ribosylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate reductase)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.48, P.66, V.67, L.68, R.71 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.67, A:L.68 Salt bridges: A:R.48, A:R.71 SO4.2: 3 residues within 4Å: Chain A: R.41, H.45, R.71 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.41, A:H.45, A:R.71 SO4.3: 7 residues within 4Å: Chain A: G.57, E.59, T.60, G.161, A.162, G.163, V.164 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.57, A:E.59, A:T.60, A:T.60, A:G.161, A:G.161, A:G.163, A:V.164 SO4.4: 6 residues within 4Å: Chain B: R.48, P.66, V.67, L.68, N.69, R.71 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:V.67, B:L.68, B:N.69 Salt bridges: B:R.48, B:R.71 SO4.5: 7 residues within 4Å: Chain B: G.57, E.59, T.60, G.161, A.162, G.163, V.164 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.57, B:G.57, B:E.59, B:T.60, B:G.161, B:G.163, B:V.164 Water bridges: B:T.60, B:T.60 SO4.6: 3 residues within 4Å: Chain B: R.41, H.45, R.71 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:R.41, B:H.45, B:R.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonomi, H.R. et al., C-terminal domain of RibD from Brucella abortus (5-amino-6-ribosylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate reductase). To be published

Release Date

2022-03-16

Peptides

Riboflavin biosynthesis protein RibD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Riboflavin biosynthesis protein RibD

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