SMTL ID : 7lsf.1

Crystal structure of the human neutralizing antibody Fab fragment T025 bound to TBEV EDIII (Western Subtype)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: W.47 Chain B: P.96, R.97, F.98 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:W.47, B:F.98 NA.3: 7 residues within 4Å: Chain A: I.103, D.104 Chain C: C.9, D.10, F.34, T.37, C.40 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:W.94, C:D.10, C:T.37

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: F.173, P.174, V.176, S.184, L.185, S.186 Chain B: Q.160, S.162, S.176, S.177, T.178 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.162, B:S.176, B:T.178, B:T.178, A:F.173, A:S.186, A:S.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Agudelo, M. et al., Broad and potent neutralizing human antibodies to tick-borne flaviviruses protect mice from disease. J.Exp.Med. (2021)

Release Date

2021-04-07

Peptides

T025 Fab Heavy Chain: A
T025 Fab Light Chain: B
Envelope protein E: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
E

T025 Fab Heavy Chain

T025 Fab Light Chain

Envelope protein E

Related Entries With Identical Sequence