SMTL ID : 7lta.1

Galectin-1 in complex with Trehalose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

homo-dimer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 7 residues within 4Å: Chain A: H.43, N.45, R.47, H.51, N.60, W.67, E.70 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.47, A:R.47 Water bridges: A:R.72 Salt bridges: A:R.47, A:H.51

8 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: K.126, I.127 Chain B: N.7, L.8, F.132 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A pi-Cation interactions: B:F.132 Hydrogen bonds: A:I.127 DMS.3: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:E.114 DMS.4: 4 residues within 4Å: Chain B: P.12, G.13, F.90, D.91 No protein-ligand interaction detected (PLIP) DMS.5: 2 residues within 4Å: Chain B: D.91, K.106 No protein-ligand interaction detected (PLIP) DMS.6: 3 residues within 4Å: Chain B: Q.71, K.106, P.108 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.71 DMS.7: 3 residues within 4Å: Chain B: G.102, Y.103, E.104 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:E.104 DMS.8: 5 residues within 4Å: Chain A: N.7, L.8, F.132 Chain B: K.126, I.127 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B pi-Cation interactions: A:F.132 Hydrogen bonds: B:I.127 DMS.9: 5 residues within 4Å: Chain A: V.4, S.6 Chain B: V.4, A.5, S.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grimm, C. et al., Galectin-1 in complex with Trehalose. To Be Published

Release Date

2022-02-23

Peptides

Galectin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Galectin-1

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