SMTL ID : 7lvw.1 (1 other biounit)

Structure of RSV F in Complex with VHH Cl184

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 3 residues within 4Å: Chain D: N.444, E.445, N.448 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: K.43, C.44, N.45 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain D: N.2, E.411 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.411

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: W.27, S.94, M.318 Chain D: Y.406 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: Y.406 Chain C: W.27 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain C: Y.406 Chain D: W.27, S.94 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rossey, I. et al., A vulnerable, membrane-proximal site in human respiratory syncytial virus F revealed by a prefusion-specific single-domain antibody. J.Virol. (2021)

Release Date

2021-03-24

Peptides

Fusion glycoprotein F0: ACD
F-VHH-Cl184: BEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

D
D

B
G

E
I

F
J

Fusion glycoprotein F0

F-VHH-Cl184

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