SMTL ID : 7lxr.1 (1 other biounit)

Kinesin-like protein at 61F (Klp61f) bound to AMPPNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 12 residues within 4Å: Chain A: L.163, Y.164, N.165, E.166, R.232, S.233, H.234, A.265, N.286, I.287, S.290 Ligands: IOD.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.165, A:E.166, A:R.232 EDO.2: 6 residues within 4Å: Chain A: L.168, I.180, R.181, I.182, K.314, R.317 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.182

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.3: 17 residues within 4Å: Chain A: R.27, R.29, P.30, T.107, G.108, T.109, G.110, K.111, T.112, H.113, M.226, N.227, S.230, S.231, A.265, G.266 Ligands: MG.4 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.108, A:T.109, A:G.110, A:K.111, A:K.111, A:T.112, A:H.113, A:N.227, A:N.227, A:S.231, A:S.231, A:G.266 Water bridges: A:R.27, A:R.27, A:P.74, A:S.76, A:S.76, A:Q.78, A:T.107, A:T.112, A:T.112, A:R.232 pi-Cation interactions: A:H.113, A:H.113

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain A: K.111, T.112, S.231 Ligands: ANP.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.112, A:S.231, H2O.2, H2O.3

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.5: 8 residues within 4Å: Chain A: L.163, E.166, H.234, S.290, S.313, K.314, L.315 Ligands: EDO.1 Ligand excluded by PLIP IOD.6: 4 residues within 4Å: Chain A: S.40, A.41, H.339, K.340 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wojcik, E.J. et al., Crystal Structure of the Klp61f motor domain bound to AMPPNP. To Be Published

Release Date

2022-11-16

Peptides

Kinesin-like protein Klp61F: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kinesin-like protein Klp61F

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