SMTL ID : 7lxu.1

Structure of Plasmodium falciparum 20S proteasome with bound MPI-5

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

2 x YHD: N-[(1R)-2-([1,1'-biphenyl]-4-yl)-1-boronoethyl]-1-methyl-L-prolinamide(Covalent)

YHD.1: 15 residues within 4Å: Chain L: T.1, R.19, A.20, S.21, M.22, V.31, E.32, K.33, M.45, G.47, A.49, L.53, G.169 Chain M: Y.158, C.159 9 PLIP interactions: 9 interactions with chain L Hydrophobic interactions: L:T.1, L:A.20, L:V.31, L:V.31, L:M.45, L:A.49, L:L.53 Hydrogen bonds: L:T.1, L:G.47 YHD.2: 15 residues within 4Å: Chain 0: Y.158, C.159 Chain Z: T.1, R.19, A.20, S.21, M.22, V.31, E.32, K.33, M.45, G.47, A.49, L.53, G.169 9 PLIP interactions: 9 interactions with chain Z Hydrophobic interactions: Z:T.1, Z:A.20, Z:V.31, Z:V.31, Z:M.45, Z:A.49, Z:L.53 Hydrogen bonds: Z:T.1, Z:G.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, S.C. et al., Design of proteasome inhibitors with oral efficacy in vivo against Plasmodium falciparum and selectivity over the human proteasome. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-09-22

Peptides

20S proteasome alpha-1 subunit: AO
20S proteasome alpha-2 subunit: BP
20S proteasome alpha-3 subunit: CQ
20S proteasome alpha-4 subunit: DR
20S proteasome alpha-5 subunit: ES
20S proteasome alpha-6 subunit: FT
20S proteasome alpha-7 subunit: GU
20S proteasome beta-1 subunit: HV
20S proteasome beta-2 subunit: IW
20S proteasome beta-3 subunit: JX
20S proteasome beta-4 subunit: KY
20S proteasome beta-5 subunit: LZ
20S proteasome beta-6 subunit: M0
20S proteasome beta-7 subunit: N1

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O
O

B
B

P
P

C
C

Q
Q

D
D

R
R

E
E

S
S

F
F

T
T

G
G

U
U

H
H

V
V

I
I

W
W

J
J

X
X

K
K

Y
Y

L
L

Z
Z

M
M

0
a

N
N

1
b

20S proteasome alpha-1 subunit

20S proteasome alpha-2 subunit

20S proteasome alpha-3 subunit

20S proteasome alpha-4 subunit

20S proteasome alpha-5 subunit

20S proteasome alpha-6 subunit

20S proteasome alpha-7 subunit

20S proteasome beta-1 subunit

20S proteasome beta-2 subunit

20S proteasome beta-3 subunit

20S proteasome beta-4 subunit

20S proteasome beta-5 subunit

20S proteasome beta-6 subunit

20S proteasome beta-7 subunit

Related Entries With Identical Sequence