SMTL ID : 7lxw.1

SARS-CoV-2 S/S2M11/S2X333 Local Refinement

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 6 residues within 4Å: Chain B: S.55, N.56, K.57, F.58 Chain C: C.15, N.17 No protein-ligand interaction detected (PLIP)

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.2: 2 residues within 4Å: Chain C: N.149, W.152 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:W.152 Hydrogen bonds: C:N.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCallum, M. et al., N-terminal domain antigenic mapping reveals a site of vulnerability for SARS-CoV-2. Cell (2021)

Release Date

2021-04-14

Peptides

S2X333 Fab Light Chain variable region: A
S2X333 Fab Heavy Chain variable region: B
Spike glycoprotein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

S2X333 Fab Light Chain variable region

S2X333 Fab Heavy Chain variable region

Spike glycoprotein

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