SMTL ID : 7lxx.1

SARS-CoV-2 S/S2M11/S2L28 Local Refinement

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 4 residues within 4Å: Chain C: C.15, V.16, N.17, N.137 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.137

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain C: H.146, N.149, S.151, M.153 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCallum, M. et al., N-terminal domain antigenic mapping reveals a site of vulnerability for SARS-CoV-2. Cell (2021)

Release Date

2021-04-14

Peptides

S2L28 Fab Heavy Chain variable region: A
S2L28 Fab Light Chain variable region: B
Spike glycoprotein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

S2L28 Fab Heavy Chain variable region

S2L28 Fab Light Chain variable region

Spike glycoprotein

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