SMTL ID : 7ly4.1

Cryo-EM structure of the elongation module of the bacillamide NRPS, BmdB, in complex with the oxidase, BmdC

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 15 residues within 4Å: Chain A: R.148, S.149, R.151, N.238, I.241, C.293, S.294, I.295, G.296, H.317 Chain B: A.184, S.185, A.186, Y.190, Y.269 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:S.149, A:R.151, A:N.238, A:N.238, A:S.294, A:G.296, B:S.185, B:Y.190, B:Y.190 Hydrophobic interactions: B:Y.269 FMN.2: 15 residues within 4Å: Chain A: A.184, S.185, A.186, Y.190, I.276 Chain B: R.147, R.148, S.149, R.151, N.238, I.241, C.293, S.294, I.295, G.296 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.149, B:S.149, B:R.151, B:N.238, B:N.238, B:G.296, A:S.185 Hydrophobic interactions: A:A.186, A:I.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fortinez, C.M. et al., Structures and function of a tailoring oxidase in complex with a nonribosomal peptide synthetase module. Nat Commun (2022)

Release Date

2022-02-02

Peptides

BmdC, Oxidase: AB
BmdB, bacillamide NRPS: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
E

BmdC, Oxidase

BmdB, bacillamide NRPS

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