SMTL ID : 7lyb.1

Cryo-EM structure of the human nucleosome core particle in complex with BRCA1-BARD1-UbcH5c

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-1-1-1-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain I: C.48, C.51, K.56, C.68, C.71 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.48, I:C.51, I:C.68, I:C.71 ZN.2: 5 residues within 4Å: Chain I: C.63, H.65, C.85, C.88, K.89 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.63, I:H.65, I:C.85, I:C.88 ZN.3: 5 residues within 4Å: Chain K: C.25, C.28, F.45, C.46, C.49 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.25, K:C.28, K:C.46, K:C.49 ZN.4: 4 residues within 4Å: Chain K: C.41, H.43, C.58, C.61 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.41, K:H.43, K:C.58, K:C.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Q. et al., Mechanisms of BRCA1-BARD1 nucleosome recognition and ubiquitylation. Nature (2021)

Release Date

2021-07-28

Peptides

Histone H3.1: AD
Histone H4: BE
Histone H2B type 1-J: CF
Isoform 7 of Breast cancer type 1 susceptibility protein: I
Ubiquitin-conjugating enzyme E2 D3: J
BRCA1-associated RING domain protein 1: K
Histone H2A type 1-B/E: LM

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
E

B
B

E
F

C
D

F
H

I
M

J
P

K
N

L
C

M
G

Histone H3.1

Histone H4

Histone H2B type 1-J

Isoform 7 of Breast cancer type 1 susceptibility protein

Ubiquitin-conjugating enzyme E2 D3

BRCA1-associated RING domain protein 1

Histone H2A type 1-B/E

Related Entries With Identical Sequence