SMTL ID : 7lyx.1

Crystal structure of human CYP8B1 in complex with (S)-tioconazole

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 33 residues within 4Å: Chain A: F.81, H.102, I.105, H.106, L.113, L.167, W.236, M.261, A.264, S.265, N.268, T.269, T.272, L.330, A.334, P.336, L.338, R.340, P.414, W.415, G.416, S.417, S.420, I.421, C.422, P.423, G.424, F.427, A.428, E.431, G.465, T.466 Ligands: YHM.2 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:F.81, A:I.105, A:W.236, A:N.268, A:P.336, A:W.415, A:P.423 Hydrogen bonds: A:S.417 Salt bridges: A:H.102, A:H.106, A:R.340 pi-Stacking: A:W.415 Metal complexes: A:C.422

1 x YHM: (S)-Tioconazole(Non-covalent)

YHM.2: 18 residues within 4Å: Chain A: F.81, Y.84, A.85, L.88, V.89, F.93, F.195, M.260, M.261, W.263, A.264, N.268, T.337, L.339, G.463, F.464 Ligands: HEM.1, GOL.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.464 Hydrogen bonds: A:N.268

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 13 residues within 4Å: Chain A: F.31, M.35, F.59, Y.84, L.88, V.199, Y.200, T.337, L.339, W.462, G.463, F.464 Ligands: YHM.2 No protein-ligand interaction detected (PLIP)

1 x K: POTASSIUM ION(Non-functional Binders)

K.4: 1 residues within 4Å: Chain A: I.105 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., The structure and characterization of human cytochrome P450 8B1 supports future drug design for nonalcoholic fatty liver disease and diabetes. J.Biol.Chem. (2022)

Release Date

2022-08-17

Peptides

7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase

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