SMTL ID : 7m09.1

Pre-catalytic quaternary complex of DNA Polymerase Lambda with blunt-ended DSB substrate and incoming dUMPNPP

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.65 Å
Oligo State
monomer
Ligands
1 x DC- DG- DG- DC- DA: DNA (5'-D(*CP*GP*GP*CP*A)-3')(Non-covalent)
1 x DC- DA- DG- DT- DG- DC: DNA (5'-D(*CP*AP*GP*TP*GP*C)-3')(Non-covalent)
1 x DG- DC- DC- DG: DNA (5'-D(P*GP*CP*CP*G)-3')(Non-covalent)
1 x DG- DC- DA- DC- DT- DG: DNA (5'-D(*GP*CP*AP*CP*TP*G)-3')(Non-covalent)
1 x DUP: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE(Non-covalent)
1 x CA: CALCIUM ION(Non-covalent)
2 x MG: MAGNESIUM ION(Non-covalent)
3 x NA: SODIUM ION(Non-functional Binders)
2 x CL: CHLORIDE ION(Non-functional Binders)
2 x GOL: GLYCEROL(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kaminski, A.M. et al., Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining. Nat Commun (2022)
Release Date
2022-03-16
Peptides
DNA polymerase lambda: A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A

DNA polymerase lambda

Related Entries With Identical Sequence

7m07.1 | 7m08.1 | 7m0a.1 | 7m0b.1 | 7m0c.1 | 7m0d.1 | 7m0d.2