SMTL ID : 7m0i.1 (1 other biounit)

Crystal structure of a human metapneumovirus subtype B2 trimeric fusion protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

hetero-3-3-mer

Ligands

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.39, K.50 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.39 NAG.2: 1 residues within 4Å: Chain B: N.61 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.61 NAG.3: 1 residues within 4Å: Chain B: N.242 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.242 NAG.4: 2 residues within 4Å: Chain C: N.39, T.41 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.39 NAG.5: 2 residues within 4Å: Chain D: N.242, S.244 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.244, D:S.244 NAG.6: 1 residues within 4Å: Chain D: N.61 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.61 NAG.7: 1 residues within 4Å: Chain E: N.39 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.39 NAG.8: 2 residues within 4Å: Chain F: K.60, N.61 No protein-ligand interaction detected (PLIP) NAG.9: 3 residues within 4Å: Chain F: N.242, S.244, T.246 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:N.242, F:T.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, J. et al., Structure, Immunogenicity, and Conformation-Dependent Receptor Binding of the Postfusion Human Metapneumovirus F Protein. J.Virol. (2021)

Release Date

2021-06-30

Peptides

Fusion glycoprotein F2: ACE
Fusion glycoprotein F1: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
I

E
K

B
H

D
J

F
L

Fusion glycoprotein F2

Fusion glycoprotein F1

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