SMTL ID : 7m0r.1

Cryo-EM structure of the Sema3A/PlexinA4/Neuropilin 1 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.57, D.64, D.105, E.107, T.108 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.57, A:D.64, A:D.105, A:D.105, A:T.108 CA.2: 6 residues within 4Å: Chain A: Y.146, E.174, D.188, T.228, D.229, I.232 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.174, A:D.188, A:D.188, A:T.228, A:I.232 CA.3: 5 residues within 4Å: Chain C: E.57, D.64, D.105, E.107, T.108 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.57, C:D.64, C:D.105, C:D.105, C:T.108 CA.4: 6 residues within 4Å: Chain C: Y.146, E.174, D.188, T.228, D.229, I.232 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.174, C:D.188, C:D.188, C:T.228, C:I.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, D. et al., Architecture of the Sema3A/PlexinA4/Neuropilin tripartite complex. Nat Commun (2021)

Release Date

2021-05-05

Peptides

Neuropilin-1: AC
Semaphorin-3A: BD
Plexin-A4: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

C
F

B
C

D
D

E
A

F
B

Neuropilin-1

Semaphorin-3A

Plexin-A4