SMTL ID : 7m17.1

SN-407-LRRC8A in MSP1E3D1 lipid nanodiscs (Pose-1)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

18 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)

PEE.1: 8 residues within 4Å: Chain A: Y.124, L.128, L.130 Chain B: M.37, F.41, I.320, L.321 Ligands: PEE.2 Ligand excluded by PLIP PEE.2: 3 residues within 4Å: Chain A: W.120, Y.285 Ligands: PEE.1 Ligand excluded by PLIP PEE.3: 3 residues within 4Å: Chain A: I.320, S.323 Ligands: PEE.18 Ligand excluded by PLIP PEE.4: 1 residues within 4Å: Chain B: I.320 Ligand excluded by PLIP PEE.5: 6 residues within 4Å: Chain B: W.120, Y.127, L.128, L.130 Chain C: F.41, I.320 Ligand excluded by PLIP PEE.6: 2 residues within 4Å: Chain B: W.120, Y.285 Ligand excluded by PLIP PEE.7: 3 residues within 4Å: Chain C: K.319, I.320, S.323 Ligand excluded by PLIP PEE.9: 9 residues within 4Å: Chain C: W.120, K.123, Y.127, L.128 Chain D: I.38, I.320, L.321 Ligands: PEE.10, PEE.11 Ligand excluded by PLIP PEE.10: 2 residues within 4Å: Chain C: W.120 Ligands: PEE.9 Ligand excluded by PLIP PEE.11: 5 residues within 4Å: Chain D: K.319, I.320, S.323, F.324 Ligands: PEE.9 Ligand excluded by PLIP PEE.12: 11 residues within 4Å: Chain D: W.120, Y.124, L.128, L.130, L.131 Chain E: I.38, F.41, I.320, L.321 Ligands: PEE.13, PEE.14 Ligand excluded by PLIP PEE.13: 2 residues within 4Å: Chain D: W.120 Ligands: PEE.12 Ligand excluded by PLIP PEE.14: 4 residues within 4Å: Chain E: K.319, I.320, S.323 Ligands: PEE.12 Ligand excluded by PLIP PEE.15: 9 residues within 4Å: Chain E: W.120, Y.124, Y.127 Chain F: M.37, I.38, F.41, L.321 Ligands: PEE.16, PEE.17 Ligand excluded by PLIP PEE.16: 3 residues within 4Å: Chain E: W.120, L.128 Ligands: PEE.15 Ligand excluded by PLIP PEE.17: 3 residues within 4Å: Chain F: I.320, S.323 Ligands: PEE.15 Ligand excluded by PLIP PEE.18: 9 residues within 4Å: Chain A: F.41, I.320, L.321 Chain F: W.120, Y.127, L.128, L.130 Ligands: PEE.3, PEE.19 Ligand excluded by PLIP PEE.19: 2 residues within 4Å: Chain F: W.120 Ligands: PEE.18 Ligand excluded by PLIP

1 x YNJ: 7-{[(2S)-2-butyl-6,7-dichloro-2-cyclopentyl-1-oxo-2,3-dihydro-1H-inden-5-yl]oxy}heptanoic acid(Non-covalent)

YNJ.8: 6 residues within 4Å: Chain A: R.103 Chain B: R.103 Chain C: R.103 Chain D: R.103 Chain E: R.103 Chain F: R.103 4 PLIP interactions: 1 interactions with chain B, 1 interactions with chain E, 1 interactions with chain C, 1 interactions with chain D Salt bridges: B:R.103, E:R.103, C:R.103, D:R.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gunasekar, S.K. et al., Small molecule SWELL1 complex induction improves glycemic control and nonalcoholic fatty liver disease in murine Type 2 diabetes. Nat Commun (2022)

Release Date

2021-03-24

Peptides

Volume-regulated anion channel subunit LRRC8A: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Membrane

We predict this structure to be a membrane protein.
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Volume-regulated anion channel subunit LRRC8A

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