SMTL ID : 7m22.1

Cryo-EM structure of the HCMV pentamer bound by human neuropilin 2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: Y.103 Chain C: Y.34, N.63, E.66 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.34, C:N.63, C:E.66 NAG.3: 2 residues within 4Å: Chain D: N.135, Y.243 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.135

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain D: Y.147, D.189, D.230, V.233 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.189, D:D.189, D:D.230, D:D.230, D:V.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wrapp, D. et al., Structural basis for HCMV Pentamer recognition by neuropilin 2 and neutralizing antibodies. Sci Adv (2022)

Release Date

2021-08-11

Peptides

Envelope protein UL128: A
Envelope glycoprotein UL130: B
UL131A: C
Neuropilin-2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

D
N

Envelope protein UL128

Envelope glycoprotein UL130

UL131A

Neuropilin-2

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