SMTL ID : 7m30.1

Cryo-EM structure of the HCMV pentamer bound by antibodies 1-103, 1-32 and 2-25

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain C: N.176 Chain D: H.98 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.98 NAG.2: 4 residues within 4Å: Chain D: Y.34, N.63, T.65, E.66 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Y.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wrapp, D. et al., Structural basis for HCMV Pentamer recognition by neuropilin 2 and neutralizing antibodies. Sci Adv (2022)

Release Date

2021-08-11

Peptides

Envelope glycoprotein L: A
Envelope protein UL128: B
Envelope glycoprotein UL130: C
UL131A: D
2-25 Fab Heavy Chain: E
2-25 Fab Light Chain: F
1-32 Fab Heavy Chain: G
1-32 Fab Light Chain: H
1-103 Fab Heavy Chain: I
1-103 Fab Light Chain: J

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

D
E

E
F

F
G

G
H

H
L

I
M

J
N

Envelope glycoprotein L

Envelope protein UL128

Envelope glycoprotein UL130

UL131A

2-25 Fab Heavy Chain

2-25 Fab Light Chain

1-32 Fab Heavy Chain

1-32 Fab Light Chain

1-103 Fab Heavy Chain

1-103 Fab Light Chain

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