- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x YP1: 2-chloro-6-[(2R)-2-hydroxy-3-{[2-methyl-1-(naphthalen-2-yl)propan-2-yl]amino}propoxy]benzonitrile(Non-covalent)
- 9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 3 residues within 4Å:- Chain A: E.265, V.266, N.269
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.266
- Hydrogen bonds: A:E.265, A:N.269
NAG.4: 1 residues within 4Å:- Chain A: N.295
No protein-ligand interaction detected (PLIP)NAG.5: 5 residues within 4Å:- Chain A: K.331, N.496, Y.518, N.520, Y.522
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.331
NAG.6: 2 residues within 4Å:- Chain A: N.476, Q.484
No protein-ligand interaction detected (PLIP)NAG.13: 6 residues within 4Å:- Chain B: R.213, N.215, F.547, N.549, D.553, D.586
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.213, B:R.213, B:N.215, B:N.549
NAG.14: 4 residues within 4Å:- Chain B: H.262, E.265, V.266, N.269
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.265, B:E.265
NAG.15: 2 residues within 4Å:- Chain B: N.295, T.297
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.295
NAG.16: 5 residues within 4Å:- Chain B: K.331, N.496, Y.518, N.520, Y.522
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:Y.522
- Hydrogen bonds: B:N.496
NAG.17: 2 residues within 4Å:- Chain B: N.476, T.486
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:T.486
- Hydrogen bonds: B:N.476
- 2 x TRP: TRYPTOPHAN(Non-covalent)
TRP.7: 10 residues within 4Å:- Chain A: R.74, T.153, G.154, S.155, A.176, S.177, S.178, Y.226, E.305, A.306
8 PLIP interactions:1 Ligand-Ligand interactions, 7 interactions with chain A- Hydrogen bonds: W.7, A:S.155, A:S.178, A:S.178, A:S.178, A:E.305
- Hydrophobic interactions: A:T.153, A:A.176
TRP.18: 9 residues within 4Å:- Chain B: R.74, W.78, T.153, S.155, A.176, S.178, Y.226, E.305, A.306
8 PLIP interactions:7 interactions with chain B, 1 Ligand-Ligand interactions- Hydrophobic interactions: B:W.78, B:T.153
- Hydrogen bonds: B:S.155, B:S.178, B:S.178, B:S.178, B:E.305, W.18
- 4 x CA: CALCIUM ION(Non-covalent)
CA.8: 4 residues within 4Å:- Chain A: I.89, S.92, L.95, L.96
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:S.92, A:L.95, A:L.96
CA.9: 2 residues within 4Å:- Chain A: D.242
- Chain B: G.565
No protein-ligand interaction detected (PLIP)CA.10: 2 residues within 4Å:- Chain A: G.565
- Chain B: D.242
No protein-ligand interaction detected (PLIP)CA.19: 5 residues within 4Å:- Chain B: I.89, N.90, S.92, L.95, L.96
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:I.89, B:S.92, B:L.95
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.11: 8 residues within 4Å:- Chain A: R.74, R.77, W.78, H.421, L.422, R.423, I.424, S.425
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.423, A:I.424, A:S.425, A:S.425
- Salt bridges: A:R.74, A:R.77
PO4.20: 8 residues within 4Å:- Chain B: R.74, R.77, W.78, H.421, L.422, R.423, I.424, S.425
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.423, B:I.424, B:S.425
- Salt bridges: B:R.74, B:R.77
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gao, Y. et al., Asymmetric activation of the calcium-sensing receptor homodimer. Nature (2021)
- Release Date
- 2021-06-30
- Peptides
- Extracellular calcium-sensing receptor: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x YP1: 2-chloro-6-[(2R)-2-hydroxy-3-{[2-methyl-1-(naphthalen-2-yl)propan-2-yl]amino}propoxy]benzonitrile(Non-covalent)
- 9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x TRP: TRYPTOPHAN(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gao, Y. et al., Asymmetric activation of the calcium-sensing receptor homodimer. Nature (2021)
- Release Date
- 2021-06-30
- Peptides
- Extracellular calcium-sensing receptor: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.