- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 2.80 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 2 residues within 4Å:- Chain A: V.266, N.269
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.266
- Hydrogen bonds: A:N.269
NAG.5: 2 residues within 4Å:- Chain A: N.295, H.320
No protein-ligand interaction detected (PLIP)NAG.6: 3 residues within 4Å:- Chain A: N.476, Q.484, T.486
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:T.486
NAG.7: 1 residues within 4Å:- Chain A: N.602
No protein-ligand interaction detected (PLIP)NAG.14: 3 residues within 4Å:- Chain B: E.265, V.266, N.269
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:V.266
- Hydrogen bonds: B:E.265
NAG.15: 1 residues within 4Å:- Chain B: N.295
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.295
NAG.16: 5 residues within 4Å:- Chain B: K.331, N.496, Y.518, N.520, Y.522
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:Y.522
- Hydrogen bonds: B:N.496
NAG.17: 3 residues within 4Å:- Chain B: N.476, Q.484, T.486
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:T.486
NAG.18: 1 residues within 4Å:- Chain B: N.602
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.602
- 2 x YP4: N-[(1R)-1-(naphthalen-1-yl)ethyl]-3-[3-(trifluoromethyl)phenyl]propan-1-amine(Non-covalent)
YP4.8: 8 residues within 4Å:- Chain A: Q.689, F.692, I.785, T.788, W.826, I.830, Y.833, E.845
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:F.692, A:F.692, A:I.785, A:T.788, A:W.826, A:W.826, A:W.826, A:W.826, A:I.830
- Hydrogen bonds: A:Q.689, A:E.845
- pi-Stacking: A:F.692, A:Y.833
YP4.19: 8 residues within 4Å:- Chain B: Q.689, F.692, L.778, L.781, L.784, I.785, T.788, W.826
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:F.692, B:F.692, B:L.781, B:L.784, B:I.785, B:T.788, B:W.826, B:W.826
- pi-Stacking: B:F.692
- 2 x TRP: TRYPTOPHAN(Non-covalent)
TRP.9: 10 residues within 4Å:- Chain A: R.74, T.153, G.154, S.155, A.176, S.177, S.178, Y.226, E.305, A.306
8 PLIP interactions:1 Ligand-Ligand interactions, 7 interactions with chain A- Hydrogen bonds: W.9, A:S.155, A:S.178, A:S.178, A:S.178, A:E.305
- Hydrophobic interactions: A:T.153, A:A.176
TRP.20: 10 residues within 4Å:- Chain B: R.74, T.153, G.154, S.155, A.176, S.177, S.178, Y.226, E.305, A.306
7 PLIP interactions:6 interactions with chain B, 1 Ligand-Ligand interactions- Hydrophobic interactions: B:T.153
- Hydrogen bonds: B:S.155, B:S.178, B:S.178, B:S.178, B:E.305, W.20
- 4 x CA: CALCIUM ION(Non-covalent)
CA.10: 4 residues within 4Å:- Chain A: I.89, S.92, L.95, L.96
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:S.92, A:L.95, A:L.96
CA.11: 1 residues within 4Å:- Chain A: G.565
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:G.565
CA.12: 2 residues within 4Å:- Chain A: D.242
- Chain B: G.565
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Metal complexes: A:D.242, B:G.565
CA.21: 3 residues within 4Å:- Chain B: I.89, S.92, L.96
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:S.92, B:L.96
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.13: 8 residues within 4Å:- Chain A: R.74, R.77, W.78, H.421, L.422, R.423, I.424, S.425
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.423, A:I.424, A:S.425, A:S.425
- Salt bridges: A:R.74, A:R.77
PO4.22: 8 residues within 4Å:- Chain B: R.74, R.77, W.78, H.421, L.422, R.423, I.424, S.425
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:W.78, B:R.423, B:I.424, B:S.425
- Salt bridges: B:R.74, B:R.77
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gao, Y. et al., Asymmetric activation of the calcium-sensing receptor homodimer. Nature (2021)
- Release Date
- 2021-06-30
- Peptides
- Extracellular calcium-sensing receptor: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 2.80 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x YP4: N-[(1R)-1-(naphthalen-1-yl)ethyl]-3-[3-(trifluoromethyl)phenyl]propan-1-amine(Non-covalent)
- 2 x TRP: TRYPTOPHAN(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gao, Y. et al., Asymmetric activation of the calcium-sensing receptor homodimer. Nature (2021)
- Release Date
- 2021-06-30
- Peptides
- Extracellular calcium-sensing receptor: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.