SMTL ID : 7m3h.1

Targeting Enterococcus faecalis HMG-CoA reductase with a novel non-statin inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

homo-dimer

Ligands

2 x YPV: 5-[(4-butylphenyl)sulfamoyl]-2-hydroxybenzoic acid(Non-covalent)

YPV.1: 23 residues within 4Å: Chain A: E.86, S.88, V.89, A.91, A.92, N.95, R.257, T.260, H.261, G.264, N.267, Q.359, A.362, A.363, R.365, A.366, L.367, E.370, I.372, G.375, H.376, L.379 Chain B: I.210 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.92, A:N.95, A:A.363, A:A.366, A:I.372 Hydrogen bonds: A:N.267, A:Q.359 Salt bridges: A:R.257 YPV.3: 23 residues within 4Å: Chain A: I.210 Chain B: E.86, S.88, V.89, A.91, A.92, N.95, R.257, T.260, H.261, G.264, N.267, Q.359, A.362, A.363, R.365, A.366, L.367, E.370, I.372, G.375, H.376, L.379 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:A.92, B:N.95, B:A.363, B:A.366, B:L.379 Hydrogen bonds: B:N.267, B:Q.359 Water bridges: B:E.86 Salt bridges: B:R.257

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: A.180, M.181, G.182, A.183, N.184, G.324, G.325 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:M.181, A:G.182, A:A.183, A:N.184, A:N.184, A:G.325 Water bridges: A:N.184, A:N.184, A:N.184, A:N.184, A:I.185 SO4.4: 7 residues within 4Å: Chain B: A.180, M.181, G.182, A.183, N.184, G.324, G.325 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:M.181, B:G.182, B:A.183, B:N.184, B:G.325 Water bridges: B:N.184, B:N.184, B:N.184, B:N.184, B:I.185 SO4.5: 6 residues within 4Å: Chain A: N.42, T.43, A.44 Chain B: N.42, T.43, A.44 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Water bridges: A:N.42, A:T.43, A:T.43, B:N.42, B:T.43, B:T.43 Hydrogen bonds: B:T.43

1 x CA: CALCIUM ION(Non-covalent)

CA.6: 4 residues within 4Å: Chain B: A.100, G.102, T.224, A.225 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:G.102, H2O.20, H2O.20, H2O.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bose, S. et al., Targeting Enterococcus faecalis HMG-CoA reductase with a novel non-statin inhibitor. To Be Published

Release Date

2022-09-21

Peptides

Hydroxymethylglutaryl-CoA reductase, degradative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hydroxymethylglutaryl-CoA reductase, degradative

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