SMTL ID : 7m3y.1

Structure of TIM-3 in complex with 8-chloro-2-methyl-9-(3-mehtylpyridin-4-yl)-[1,2,4]triazolo[1,5-c]quinazolin-5(6H)-one (compound 22)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x YQ7: (4R,10aP)-8-chloro-2-methyl-9-(3-methylpyridin-4-yl)[1,2,4]triazolo[1,5-c]quinazolin-5(6H)-one(Non-covalent)

YQ7.1: 11 residues within 4Å: Chain A: L.47, D.53, V.54, W.57, T.58, S.59, R.60, Y.61, W.62, L.63, F.67 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.54, A:W.57, A:W.62, A:W.62 Hydrogen bonds: A:R.60, A:Y.61 pi-Stacking: A:W.57, A:W.57, A:W.57, A:W.57, A:W.62

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: I.93, G.95, N.98, D.99 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:I.93, A:G.95, A:D.99, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rietz, T.A. et al., Fragment-Based Discovery of Small Molecules Bound to T-Cell Immunoglobulin and Mucin Domain-Containing Molecule 3 (TIM-3). J.Med.Chem. (2021)

Release Date

2021-10-13

Peptides

Hepatitis A virus cellular receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Hepatitis A virus cellular receptor 2

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