- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- monomer
- Ligands
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 4 x 1DO: 1-DODECANOL(Non-covalent)
- 1 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.3: 19 residues within 4Å:- Chain A: N.238, Y.240, Y.241, S.274, V.429, L.432, S.433, A.436, L.437, T.440, V.465, V.468, V.469, L.473, P.474, M.477, T.478
- Ligands: 1DO.2, Y01.4
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:A.436, A:L.437, A:V.465, A:V.468
- Hydrogen bonds: A:N.238, A:Y.241, A:Y.241
- 4 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)
Y01.4: 12 residues within 4Å:- Chain A: N.238, P.239, Y.240, F.243, S.433, L.437, L.462, V.465, V.469
- Ligands: LMT.3, Y01.5, D10.6
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.243, A:F.243
Y01.5: 11 residues within 4Å:- Chain A: A.58, G.59, P.61, L.237, N.238, P.239, G.242, F.243, F.246, L.462
- Ligands: Y01.4
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:P.61, A:L.237, A:P.239, A:F.246
Y01.10: 16 residues within 4Å:- Chain A: I.269, L.273, Y.276, K.280, V.479, L.482, Y.483, S.486, R.489, L.968, V.969, T.972, T.973, V.976, L.977
- Ligands: Y01.11
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.273, A:Y.483
- Salt bridges: A:K.280
Y01.11: 14 residues within 4Å:- Chain A: Y.483, V.969, T.973, L.977, R.980, P.1080, V.1083, A.1084, L.1087, L.1088, L.1102
- Ligands: 1DO.9, Y01.10, D12.12
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:V.969, A:A.1084, A:L.1087, A:L.1087, A:L.1088
- Hydrogen bonds: A:R.980
- 9 x D10: DECANE(Non-functional Binders)(Non-covalent)
D10.6: 4 residues within 4Å:- Chain A: L.62, F.65, P.239
- Ligands: Y01.4
No protein-ligand interaction detected (PLIP)D10.13: 5 residues within 4Å:- Chain A: V.1079, V.1083, L.1087
- Ligands: D12.12, D10.14
No protein-ligand interaction detected (PLIP)D10.14: 7 residues within 4Å:- Chain A: Y.1076, T.1077, V.1079, L.1082, V.1083
- Ligands: D10.13, D10.16
No protein-ligand interaction detected (PLIP)D10.15: 10 residues within 4Å:- Chain A: A.1063, P.1074, L.1075, Y.1076, L.1082, L.1085, F.1128, F.1132
- Ligands: D10.16, D10.22
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:Y.1076
D10.16: 4 residues within 4Å:- Chain A: Y.1076, L.1082
- Ligands: D10.14, D10.15
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:Y.1076
D10.19: 5 residues within 4Å:- Chain A: L.1118, L.1121, G.1122, T.1125
- Ligands: D10.20
No protein-ligand interaction detected (PLIP)D10.20: 3 residues within 4Å:- Chain A: L.1097, L.1118
- Ligands: D10.19
No protein-ligand interaction detected (PLIP)D10.21: 6 residues within 4Å:- Chain A: V.1093, G.1094, L.1097, V.1098, P.1099, T.1114
No protein-ligand interaction detected (PLIP)D10.22: 6 residues within 4Å:- Chain A: T.1125, F.1128, V.1129, F.1132, M.1133
- Ligands: D10.15
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.1128
- 2 x D12: DODECANE(Non-covalent)
D12.7: 7 residues within 4Å:- Chain A: I.248, L.252, Y.257, W.258, A.260, L.261, F.264
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Y.257, A:W.258, A:W.258
D12.12: 7 residues within 4Å:- Chain A: R.980, V.1079, P.1080, V.1083, L.1087
- Ligands: Y01.11, D10.13
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.1079
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
ANP.23: 26 residues within 4Å:- Chain A: D.513, K.514, T.515, D.571, M.573, D.574, F.630, S.632, Q.635, R.636, M.637, K.654, G.655, S.656, P.657, R.686, V.687, V.688, V.749, T.750, G.751, D.752, R.853, K.859, N.881
- Ligands: MG.1
17 PLIP interactions:17 interactions with chain A- Hydrogen bonds: A:D.513, A:K.514, A:T.515, A:T.515, A:D.574, A:K.654, A:K.654, A:R.686, A:R.686, A:V.749, A:G.751, A:D.752, A:R.853, A:K.859, A:N.881
- pi-Stacking: A:F.630, A:F.630
- 1 x EUJ: (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tillinghast, J. et al., Structural mechanisms for gating and ion selectivity of the human polyamine transporter ATP13A2. Mol.Cell (2021)
- Release Date
- 2022-03-30
- Peptides
- Polyamine-transporting ATPase 13A2: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- monomer
- Ligands
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 4 x 1DO: 1-DODECANOL(Non-covalent)
- 1 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 4 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)
- 9 x D10: DECANE(Non-functional Binders)(Non-covalent)
- 2 x D12: DODECANE(Non-covalent)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 1 x EUJ: (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tillinghast, J. et al., Structural mechanisms for gating and ion selectivity of the human polyamine transporter ATP13A2. Mol.Cell (2021)
- Release Date
- 2022-03-30
- Peptides
- Polyamine-transporting ATPase 13A2: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.