SMTL ID : 7m6u.1 (1 other biounit)

Crystal structure of a circular permutation and computationally designed pro-enzyme of carboxypeptidase G2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

homo-dimer

Ligands

11 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.76, E.110, E.111, H.320 Ligands: ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.76, A:E.111, A:E.111, A:H.320, H2O.2 ZN.2: 6 residues within 4Å: Chain A: H.47, D.76, E.110, E.111, E.135 Ligands: ZN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.47, A:D.76, A:E.135, A:E.135, H2O.2 ZN.3: 2 residues within 4Å: Chain A: E.401, R.413 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.401, A:E.401, H2O.2 ZN.4: 2 residues within 4Å: Chain A: H.164, N.210 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.164, H2O.2 ZN.5: 1 residues within 4Å: Chain A: D.389 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.389 ZN.6: 1 residues within 4Å: Chain A: E.289 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.289, H2O.2 ZN.7: 1 residues within 4Å: Chain A: E.403 No protein-ligand interaction detected (PLIP) ZN.9: 5 residues within 4Å: Chain B: D.76, E.110, E.111, H.320 Ligands: ZN.10 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.76, B:E.111, B:E.111, B:H.320, H2O.3 ZN.10: 6 residues within 4Å: Chain B: H.47, D.76, E.110, E.111, E.135 Ligands: ZN.9 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.47, B:D.76, B:E.135, B:E.135, H2O.3 ZN.11: 2 residues within 4Å: Chain B: H.164, N.210 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.164, H2O.3, H2O.3 ZN.12: 3 residues within 4Å: Chain B: E.384, D.389, G.392 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.389, B:D.389, H2O.3

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 3 residues within 4Å: Chain A: K.89, E.93, E.369 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.369 Salt bridges: A:K.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yachnin, B.J. et al., Massively parallel, computationally guided design of a proenzyme. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2021-04-14

Peptides

Carboxypeptidase G2 circular permuation pro-domain fusion: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Carboxypeptidase G2 circular permuation pro-domain fusion

Related Entries With Identical Sequence