SMTL ID : 7m71.1

SARS-CoV-2 Spike:5A6 Fab complex I focused refinement

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.331 No protein-ligand interaction detected (PLIP) NAG.2: 4 residues within 4Å: Chain A: G.339, F.342, N.343, L.368 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.342, A:L.368 NAG.3: 1 residues within 4Å: Chain B: N.331 No protein-ligand interaction detected (PLIP) NAG.4: 4 residues within 4Å: Chain B: G.339, F.342, N.343, L.368 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.342, B:L.368 Hydrogen bonds: B:N.343

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asarnow, D. et al., Structural insight into SARS-CoV-2 neutralizing antibodies and modulation of syncytia. Cell (2021)

Release Date

2021-05-26

Peptides

Spike glycoprotein: AB
Antibody 5A6 Fab heavy chain: C
Antibody 5A6 Fab light chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

Spike glycoprotein

Antibody 5A6 Fab heavy chain

Antibody 5A6 Fab light chain

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