SMTL ID : 7m7b.1

SARS-CoV-2 Spike:Fab 3D11 complex focused refinement

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.331 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.331 NAG.2: 5 residues within 4Å: Chain A: F.338, G.339, F.342, N.343, L.368 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.342, A:L.368

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asarnow, D. et al., Structural insight into SARS-CoV-2 neutralizing antibodies and modulation of syncytia. Cell (2021)

Release Date

2021-05-26

Peptides

Spike glycoprotein: A
Antibody Fab 3D11 heavy chain: B
Antibody Fab 3D11 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike glycoprotein

Antibody Fab 3D11 heavy chain

Antibody Fab 3D11 light chain

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