SMTL ID : 7ma0.1

HIV-1 Protease (I84V) in Complex with LR2-91

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.20, E.21, N.83 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.19, A:E.21, A:N.83 Water bridges: A:K.20 SO4.2: 5 residues within 4Å: Chain A: I.72, G.73, T.74, N.88, Q.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.74, A:T.74, A:N.88, A:Q.92 SO4.3: 3 residues within 4Å: Chain B: K.7, R.8, L.10 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Water bridges: A:R.87, B:R.8 Hydrogen bonds: B:R.8 Salt bridges: B:R.8 SO4.4: 5 residues within 4Å: Chain B: L.19, K.20, E.21, E.34, N.83 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:L.19, B:E.21, B:E.34, B:N.83 Water bridges: B:K.20, B:K.20 Salt bridges: B:K.20 SO4.5: 3 residues within 4Å: Chain B: Q.18, M.36, N.37 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.37, B:N.37 SO4.6: 3 residues within 4Å: Chain B: G.68, H.69, K.70 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.70

1 x NJM: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-3-hydroxy-4-[{[4-(hydroxymethyl)phenyl]sulfonyl}(2-methylpropyl)amino]-1-phenylbutan-2-yl}carbamate(Non-covalent)

NJM.7: 30 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, L.76, P.81, V.82, V.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, V.84 23 PLIP interactions: 14 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:V.32, A:I.47, A:P.81, A:V.82, B:L.23 Hydrogen bonds: A:D.29, A:D.30, A:D.30, B:G.27, B:G.27, B:G.27, B:D.29, B:D.30, B:D.30 Water bridges: A:D.29, A:D.29, A:D.29, A:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., HIV-1 Protease (I84V) in Complex with LR2-91. To Be Published

Release Date

2022-04-27

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease

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