- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x YUV: (25R)-14beta,17beta-spirost-5-en-3beta-ol(Non-covalent)
YUV.2: 4 residues within 4Å:- Chain A: I.888, D.889, F.892
- Ligands: YUY.10
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.888, A:F.892, A:F.892
YUV.5: 4 residues within 4Å:- Chain B: I.888, D.889, F.892
- Ligands: YUY.3
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:I.888, B:F.892, B:F.892
YUV.8: 4 residues within 4Å:- Chain C: I.888, D.889, F.892
- Ligands: YUY.6
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:I.888, C:F.892, C:F.892
YUV.12: 4 residues within 4Å:- Chain D: I.888, D.889, F.892
- Ligands: YUY.9
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:I.888, D:F.892, D:F.892
- 4 x YUY: (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside(Non-covalent)
YUY.3: 14 residues within 4Å:- Chain A: A.914, A.915, M.917, W.944, I.947, L.948
- Chain B: L.870, D.889, W.890, F.892, R.893, L.896, Y.900
- Ligands: YUV.5
11 PLIP interactions:4 interactions with chain A, 7 interactions with chain B- Hydrophobic interactions: A:W.944, A:I.947, A:L.948, B:L.870, B:F.892, B:R.893, B:Y.900
- Hydrogen bonds: A:M.917, B:D.889, B:D.889, B:W.890
YUY.6: 14 residues within 4Å:- Chain B: A.914, A.915, M.917, W.944, I.947, L.948
- Chain C: L.870, D.889, W.890, F.892, R.893, L.896, Y.900
- Ligands: YUV.8
11 PLIP interactions:7 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:L.870, C:F.892, C:R.893, C:Y.900, B:W.944, B:I.947, B:L.948
- Hydrogen bonds: C:D.889, C:D.889, C:W.890, B:M.917
YUY.9: 14 residues within 4Å:- Chain C: A.914, A.915, M.917, W.944, I.947, L.948
- Chain D: L.870, D.889, W.890, F.892, R.893, L.896, Y.900
- Ligands: YUV.12
11 PLIP interactions:7 interactions with chain D, 4 interactions with chain C- Hydrophobic interactions: D:L.870, D:F.892, D:R.893, D:Y.900, C:W.944, C:I.947, C:L.948
- Hydrogen bonds: D:D.889, D:D.889, D:W.890, C:M.917
YUY.10: 14 residues within 4Å:- Chain A: L.870, D.889, W.890, F.892, R.893, L.896, Y.900
- Chain D: A.914, A.915, M.917, W.944, I.947, L.948
- Ligands: YUV.2
11 PLIP interactions:7 interactions with chain A, 4 interactions with chain D- Hydrophobic interactions: A:L.870, A:F.892, A:R.893, A:Y.900, D:W.944, D:I.947, D:L.948
- Hydrogen bonds: A:D.889, A:D.889, A:W.890, D:M.917
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ruan, Z. et al., Structures of the TRPM5 channel elucidate mechanisms of activation and inhibition. Nat.Struct.Mol.Biol. (2021)
- Release Date
- 2021-07-07
- Peptides
- Transient receptor potential melastatin 5: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x YUV: (25R)-14beta,17beta-spirost-5-en-3beta-ol(Non-covalent)
- 4 x YUY: (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ruan, Z. et al., Structures of the TRPM5 channel elucidate mechanisms of activation and inhibition. Nat.Struct.Mol.Biol. (2021)
- Release Date
- 2021-07-07
- Peptides
- Transient receptor potential melastatin 5: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.