- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 5 residues within 4Å:- Chain A: E.768, Q.771, N.794, D.797, R.834
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.768, A:E.768, A:D.797
CA.7: 5 residues within 4Å:- Chain B: E.768, Q.771, N.794, D.797, R.834
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.768, B:E.768, B:D.797
CA.11: 5 residues within 4Å:- Chain C: E.768, Q.771, N.794, D.797, R.834
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:E.768, C:E.768, C:D.797
CA.15: 5 residues within 4Å:- Chain D: E.768, Q.771, N.794, D.797, R.834
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:E.768, D:E.768, D:D.797
- 4 x YUY: (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside(Non-covalent)
YUY.3: 15 residues within 4Å:- Chain A: L.870, D.889, W.890, F.892, L.896, Y.897, Y.900
- Chain D: A.914, A.915, M.917, W.944, I.947, L.948, V.951
- Ligands: YUV.4
14 PLIP interactions:10 interactions with chain A, 4 interactions with chain D- Hydrophobic interactions: A:L.870, A:D.889, A:F.892, A:L.896, A:Y.897, A:Y.900, A:Y.900, D:W.944, D:I.947, D:V.951
- Hydrogen bonds: A:D.889, A:D.889, A:W.890, D:A.915
YUY.5: 15 residues within 4Å:- Chain A: A.914, A.915, M.917, W.944, I.947, L.948, V.951
- Chain B: L.870, D.889, W.890, F.892, L.896, Y.897, Y.900
- Ligands: YUV.8
14 PLIP interactions:10 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:L.870, B:D.889, B:F.892, B:L.896, B:Y.897, B:Y.900, B:Y.900, A:W.944, A:I.947, A:V.951
- Hydrogen bonds: B:D.889, B:D.889, B:W.890, A:A.915
YUY.9: 15 residues within 4Å:- Chain B: A.914, A.915, M.917, W.944, I.947, L.948, V.951
- Chain C: L.870, D.889, W.890, F.892, L.896, Y.897, Y.900
- Ligands: YUV.12
14 PLIP interactions:4 interactions with chain B, 10 interactions with chain C- Hydrophobic interactions: B:W.944, B:I.947, B:V.951, C:L.870, C:D.889, C:F.892, C:L.896, C:Y.897, C:Y.900, C:Y.900
- Hydrogen bonds: B:A.915, C:D.889, C:D.889, C:W.890
YUY.13: 15 residues within 4Å:- Chain C: A.914, A.915, M.917, W.944, I.947, L.948, V.951
- Chain D: L.870, D.889, W.890, F.892, L.896, Y.897, Y.900
- Ligands: YUV.16
14 PLIP interactions:10 interactions with chain D, 4 interactions with chain C- Hydrophobic interactions: D:L.870, D:D.889, D:F.892, D:L.896, D:Y.897, D:Y.900, D:Y.900, C:W.944, C:I.947, C:V.951
- Hydrogen bonds: D:D.889, D:D.889, D:W.890, C:A.915
- 4 x YUV: (25R)-14beta,17beta-spirost-5-en-3beta-ol(Non-covalent)
YUV.4: 3 residues within 4Å:- Chain A: D.889, F.892
- Ligands: YUY.3
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.892, A:F.892
YUV.8: 3 residues within 4Å:- Chain B: D.889, F.892
- Ligands: YUY.5
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.892, B:F.892
YUV.12: 3 residues within 4Å:- Chain C: D.889, F.892
- Ligands: YUY.9
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:F.892, C:F.892
YUV.16: 4 residues within 4Å:- Chain D: I.888, D.889, F.892
- Ligands: YUY.13
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:I.888, D:F.892, D:F.892
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ruan, Z. et al., Structures of the TRPM5 channel elucidate mechanisms of activation and inhibition. Nat.Struct.Mol.Biol. (2021)
- Release Date
- 2021-07-07
- Peptides
- Transient receptor potential melastatin 5: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x YUY: (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside(Non-covalent)
- 4 x YUV: (25R)-14beta,17beta-spirost-5-en-3beta-ol(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ruan, Z. et al., Structures of the TRPM5 channel elucidate mechanisms of activation and inhibition. Nat.Struct.Mol.Biol. (2021)
- Release Date
- 2021-07-07
- Peptides
- Transient receptor potential melastatin 5: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.