SMTL ID : 7mdm.1

Structure of human p97 ATPase L464P mutant

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: D.205, I.206, G.207, G.208, G.248, T.249, G.250, K.251, T.252, L.253, I.380, A.409 Chain E: R.359, R.362 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain E Hydrogen bonds: A:G.207, A:G.250, A:T.252, A:T.252, A:L.253, A:A.409 Salt bridges: E:R.359, E:R.359, E:R.362 ADP.2: 14 residues within 4Å: Chain A: R.359 Chain B: D.205, I.206, G.207, G.208, G.248, T.249, G.250, K.251, T.252, L.253, I.380, H.384, A.409 11 PLIP interactions: 9 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.207, B:G.208, B:G.248, B:T.249, B:G.250, B:K.251, B:T.252, B:T.252, B:T.252 Salt bridges: A:R.359, A:R.359 ADP.3: 15 residues within 4Å: Chain B: K.236, R.362 Chain C: D.205, I.206, G.248, T.249, G.250, K.251, T.252, L.253, I.380, I.383, H.384, G.408, A.409 10 PLIP interactions: 8 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:G.248, C:T.249, C:G.250, C:K.251, C:T.252, C:E.379, C:G.408, B:K.236, B:R.362 Salt bridges: C:K.251 ADP.4: 13 residues within 4Å: Chain C: R.359, F.360 Chain D: I.206, G.248, T.249, G.250, K.251, T.252, L.253, I.380, H.384, G.408, A.409 10 PLIP interactions: 9 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:G.248, D:T.249, D:G.250, D:K.251, D:T.252, D:T.252, D:G.408, D:A.409 Salt bridges: D:K.251, C:R.359 ADP.5: 15 residues within 4Å: Chain E: D.205, I.206, G.207, G.208, C.209, G.248, T.249, G.250, K.251, T.252, L.253, I.380, A.409 Chain F: R.359, F.360 13 PLIP interactions: 11 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:G.207, E:G.208, E:C.209, E:G.248, E:T.249, E:T.249, E:G.250, E:K.251, E:T.252, E:L.253 Salt bridges: E:K.251, F:R.359, F:R.359 ADP.6: 12 residues within 4Å: Chain F: I.206, G.208, G.248, T.249, G.250, K.251, T.252, L.253, P.372, I.380, G.408, A.409 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:G.208, F:G.208, F:G.248, F:G.250, F:K.251, F:T.252, F:G.408, F:A.409 Salt bridges: F:K.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Conserved L464 in p97 D1-D2 linker is critical for p97 cofactor regulated ATPase activity. Biochem.J. (2021)

Release Date

2021-08-25

Peptides

Transitional endoplasmic reticulum ATPase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

D
E

E
A

F
F

Transitional endoplasmic reticulum ATPase

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