SMTL ID : 7mdo.1

Structure of human p97 ATPase L464P mutant

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: D.205, I.206, G.207, G.208, P.247, G.248, T.249, G.250, K.251, T.252, L.253, D.304, I.380, G.408, A.409 Chain B: K.236 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.207, A:G.208, A:G.248, A:T.249, A:T.249, A:G.250, A:K.251, A:T.252, A:T.252, A:T.252, A:L.253, B:K.236 Salt bridges: A:K.251 ADP.2: 17 residues within 4Å: Chain B: D.205, I.206, G.207, G.208, P.247, G.248, T.249, G.250, K.251, T.252, L.253, D.304, I.380, H.384, G.408, A.409 Chain C: K.236 12 PLIP interactions: 1 interactions with chain C, 11 interactions with chain B Hydrogen bonds: C:K.236, B:G.207, B:G.208, B:G.248, B:T.249, B:G.250, B:K.251, B:T.252, B:T.252, B:T.252, B:L.253 Salt bridges: B:K.251 ADP.3: 16 residues within 4Å: Chain C: D.205, I.206, G.207, G.208, P.247, G.248, T.249, G.250, K.251, T.252, L.253, D.304, I.380, G.408, A.409 Chain D: K.236 13 PLIP interactions: 1 interactions with chain D, 12 interactions with chain C Hydrogen bonds: D:K.236, C:G.207, C:G.208, C:G.248, C:T.249, C:T.249, C:G.250, C:K.251, C:T.252, C:T.252, C:T.252, C:L.253 Salt bridges: C:K.251 ADP.4: 16 residues within 4Å: Chain D: D.205, I.206, G.207, G.208, P.247, G.248, T.249, G.250, K.251, T.252, L.253, D.304, I.380, G.408, A.409 Chain E: K.236 13 PLIP interactions: 12 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:G.207, D:G.208, D:G.248, D:T.249, D:T.249, D:G.250, D:K.251, D:T.252, D:T.252, D:T.252, D:L.253, E:K.236 Salt bridges: D:K.251 ADP.5: 17 residues within 4Å: Chain E: D.205, I.206, G.207, G.208, P.247, G.248, T.249, G.250, K.251, T.252, L.253, D.304, I.380, H.384, G.408, A.409 Chain F: K.236 12 PLIP interactions: 1 interactions with chain F, 11 interactions with chain E Hydrogen bonds: F:K.236, E:G.207, E:G.208, E:G.248, E:T.249, E:G.250, E:K.251, E:T.252, E:T.252, E:T.252, E:L.253 Salt bridges: E:K.251 ADP.6: 17 residues within 4Å: Chain A: K.236 Chain F: D.205, I.206, G.207, G.208, P.247, G.248, T.249, G.250, K.251, T.252, L.253, D.304, I.380, H.384, G.408, A.409 13 PLIP interactions: 12 interactions with chain F, 1 interactions with chain A Hydrogen bonds: F:G.207, F:G.208, F:G.248, F:T.249, F:T.249, F:G.250, F:K.251, F:T.252, F:T.252, F:T.252, F:L.253, A:K.236 Salt bridges: F:K.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Conserved L464 in p97 D1-D2 linker is critical for p97 cofactor regulated ATPase activity. Biochem.J. (2021)

Release Date

2021-08-25

Peptides

Transitional endoplasmic reticulum ATPase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Transitional endoplasmic reticulum ATPase

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