SMTL ID : 7mdx.1

LolCDE nucleotide-free

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-2-mer

Ligands

1 x DCY- DSN- DAL- DAL- ALA- ALA: Triacyl-lipoprotein(Non-covalent)

DCY-DSN-DAL-DAL-ALA-ALA.1: 8 residues within 4Å: Chain A: F.50, V.259, E.262 Chain B: D.259, I.263, Y.361 Ligands: F15.2, ZM5.3 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.259 Hydrogen bonds: B:D.259, B:Y.361

1 x F15: PENTADECANOIC ACID(Non-covalent)

F15.2: 8 residues within 4Å: Chain A: M.265 Chain B: F.46, D.259, F.355, L.356, Y.361 Ligands: DCY-DSN-DAL-DAL-ALA-ALA.1, ZM5.3 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.46, B:F.355, B:L.356 Hydrogen bonds: B:D.259

1 x ZM5: (2R)-2-(tridecanoyloxy)propyl hexadecanoate

ZM5.3: 14 residues within 4Å: Chain A: V.46, M.47, F.50, E.262, M.265, M.266, L.272 Chain B: A.42, M.43, M.262, I.263, I.266 Ligands: DCY-DSN-DAL-DAL-ALA-ALA.1, F15.2 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:A.42, B:I.266, A:V.46, A:F.50, A:M.265, A:L.272

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, S. et al., Mechanism of LolCDE as a molecular extruder of bacterial triacylated lipoproteins. Nat Commun (2021)

Release Date

2021-08-11

Peptides

Lipoprotein-releasing system transmembrane protein LolC: A
Lipoprotein-releasing system transmembrane protein LolE: B
Lipoprotein-releasing system ATP-binding protein LolD: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
C

Membrane

We predict this structure to be a membrane protein.
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Lipoprotein-releasing system transmembrane protein LolC

Lipoprotein-releasing system transmembrane protein LolE

Lipoprotein-releasing system ATP-binding protein LolD