SMTL ID : 7mdx.1

LolCDE nucleotide-free

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-2-mer

Ligands

1 x YPC- DSN- DAL- DAL- ALA- ALA: Triacyl-lipoprotein(Non-covalent)

YPC-DSN-DAL-DAL-ALA-ALA.1: 18 residues within 4Å: Chain A: V.46, M.47, F.50, V.259, E.262, M.265, M.266, L.272 Chain B: A.42, M.43, F.46, D.259, M.262, I.263, I.266, F.355, L.356, Y.361 12 PLIP interactions: 7 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:A.42, B:F.46, B:I.266, B:F.355, B:L.356, A:V.46, A:F.50, A:V.259, A:M.265, A:L.272 Hydrogen bonds: B:D.259, B:Y.361

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, S. et al., Mechanism of LolCDE as a molecular extruder of bacterial triacylated lipoproteins. Nat Commun (2021)

Release Date

2021-08-11

Peptides

Lipo-releasing system transmembrane protein lolC: A
Lipoprotein-releasing system transmembrane protein: B
Lipoprotein-releasing system ATP-binding protein LolD: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
C

Membrane

We predict this structure to be a membrane protein.
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Lipo-releasing system transmembrane protein lolC

Lipoprotein-releasing system transmembrane protein

Lipoprotein-releasing system ATP-binding protein LolD