SMTL ID : 7me2.1 (1 other biounit)

YfeA oligomer crystal 2, form 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: H.76, H.141, E.207, D.282 Ligands: ZN.2, MN.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.76, A:H.141, A:E.207, A:E.207, A:D.282

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 7 residues within 4Å: Chain A: H.76, H.141, E.207, N.228, D.282 Ligands: FE.1, MN.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.76, A:H.141, A:E.207, A:E.207, A:D.282

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 6 residues within 4Å: Chain A: H.76, H.141, E.207, D.282 Ligands: FE.1, ZN.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.76, A:H.141, A:E.207, A:E.207, A:D.282 MN.4: 1 residues within 4Å: Chain A: E.287 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.287, H2O.3, H2O.9, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Radka, C.D. et al., Site 2 of the Yersinia pestis substrate-binding protein YfeA is a dynamic surface metal-binding site. Acta Crystallogr.,Sect.F (2021)

Release Date

2021-08-25

Peptides

Periplasmic chelated iron-binding protein YfeA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Periplasmic chelated iron-binding protein YfeA

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