SMTL ID : 7meq.1

Crystal structure of human TMPRSS2 in complex with Nafamostat

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.105, S.107, Y.118 No protein-ligand interaction detected (PLIP)

1 x GBS: 4-carbamimidamidobenzoic acid(Covalent)

GBS.2: 14 residues within 4Å: Chain A: D.326, S.327, C.328, Q.329, G.330, D.331, S.332, T.350, W.352, G.353, G.355, R.361, P.362, G.363 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.350 Hydrogen bonds: A:S.327, A:S.327, A:G.330, A:D.331, A:S.332, A:S.354 Water bridges: A:D.326 Salt bridges: A:D.326

3 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 2 residues within 4Å: Chain A: L.206, R.207 No protein-ligand interaction detected (PLIP) UNX.4: 1 residues within 4Å: Chain A: G.216 No protein-ligand interaction detected (PLIP) UNX.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fraser, B.J. et al., Structure and activity of human TMPRSS2 protease implicated in SARS-CoV-2 activation. Nat.Chem.Biol. (2022)

Release Date

2021-04-21

Peptides

Transmembrane protease serine 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transmembrane protease serine 2