SMTL ID : 7meu.1 (1 other biounit)

A biphenyl inhibitor of eIF4E targeting an internal binding site enables the design of cell-permeable PROTAC-degraders

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x MGP: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

MGP.1: 9 residues within 4Å: Chain A: W.31, M.76, W.77, E.78, R.132, K.134, K.137, W.141, K.181 28 PLIP interactions: 28 interactions with chain A Hydrogen bonds: A:W.77 Water bridges: A:W.31, A:W.31, A:R.87, A:R.87, A:R.87, A:R.87, A:N.130, A:N.130, A:R.132, A:K.137, A:K.137, A:K.181, A:K.181 Salt bridges: A:E.78, A:R.132, A:R.132, A:K.134, A:K.137, A:K.137, A:K.137, A:K.181 pi-Stacking: A:W.31, A:W.31, A:W.31, A:W.31, A:W.77, A:W.77

1 x Z5D: (2E)-2-{2-[4-([1,1'-biphenyl]-4-yl)-1,3-thiazol-2-yl]hydrazinylidene}-3-(2-nitrophenyl)propanoic acid(Non-covalent)

Z5D.2: 17 residues within 4Å: Chain A: L.20, F.41, F.47, L.50, Y.51, I.54, Q.55, L.56, S.58, N.59, L.60, Y.66, L.68, R.98, D.102, W.105, L.109 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.20, A:F.47, A:L.50, A:I.54, A:Q.55, A:Y.66, A:L.109 Hydrogen bonds: A:Q.55, A:L.60 Water bridges: A:Q.55 Salt bridges: A:R.98 pi-Stacking: A:Y.66, A:W.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fischer, P.D. et al., A biphenyl inhibitor of eIF4E targeting an internal binding site enables the design of cell-permeable PROTAC-degraders. Eur.J.Med.Chem. (2021)

Release Date

2021-04-28

Peptides

Eukaryotic translation initiation factor 4E: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Eukaryotic translation initiation factor 4E

Related Entries With Identical Sequence