SMTL ID : 7mev.1

Human Apex/Ref1 monomer with C138A mutation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.28, E.54 Ligands: GOL.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.28, A:E.54, H2O.2, H2O.3, H2O.5

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: E.54, Y.129, N.132, N.170 Ligands: MG.1, GOL.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.54, A:Y.129, A:N.132, A:N.170, A:N.170 Water bridges: A:N.26, A:N.26 GOL.3: 8 residues within 4Å: Chain A: N.132, R.135, A.188, G.189, F.224, W.238, L.240 Ligands: GOL.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.132, A:N.132, A:R.135 Water bridges: A:R.135, A:N.170, A:H.267, A:H.267

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nam, Y.W. et al., The Development of Novel Apurinic/Aprymidinic Endonuclease/Redox-factor 1 Inhibitors for the Treatment of Human Melanoma. To Be Published

Release Date

2022-04-13

Peptides

DNA-(apurinic or apyrimidinic site) endonuclease, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA-(apurinic or apyrimidinic site) endonuclease, mitochondrial