SMTL ID : 7mfy.1

The Crystal Structure of Q108K:K40L:T51V:T53S:R58W:Y19W:A33W:L117E Mutant of HCRBPII Bound with LizFluor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.26 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: Y.60, V.62, E.72, C.95, Q.97, W.106 Ligands: ZFG.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.97, A:W.106

1 x ZFG: 4-{5-[(2E)-but-2-en-2-yl]thiophen-2-yl}-N,N-dimethylaniline(Covalent)

ZFG.2: 13 residues within 4Å: Chain A: F.16, W.33, V.51, S.53, W.58, Y.60, V.62, L.77, W.106, K.108, E.117, L.119 Ligands: ACT.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.58, A:Y.60, A:Y.60, A:V.62, A:W.106, A:K.108, A:L.119

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: T.1, R.2, G.90, D.91 Ligands: GOL.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.1, A:R.2, A:G.90 Water bridges: A:R.2 GOL.4: 5 residues within 4Å: Chain A: V.62, D.63, F.70, D.71, K.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.63 Water bridges: A:K.75 GOL.5: 6 residues within 4Å: Chain A: T.1, D.91, W.109, I.110, E.111 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.1, A:D.91, A:E.111 Water bridges: A:I.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Santos, E.M. et al., Design of Large Stokes Shift Fluorescent Proteins Based on Excited State Proton Transfer of an Engineered Photobase. J.Am.Chem.Soc. (2021)

Release Date

2022-01-12

Peptides

Retinol-binding protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Retinol-binding protein 2