SMTL ID : 7mge.1

Structure of C9orf72:SMCR8:WDR41 in complex with ARF1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Covalent)

GDP.1: 15 residues within 4Å: Chain B: R.147 Chain D: L.11, A.13, A.14, G.15, K.16, T.17, T.18, T.31, K.113, D.115, C.145, A.146 Ligands: BEF.2, MG.3 12 PLIP interactions: 11 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:A.13, D:A.14, D:K.16, D:T.17, D:T.17, D:T.31, D:A.146 Salt bridges: D:K.16, D:K.16, D:D.115, B:R.147 pi-Cation interactions: D:K.113

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 8 residues within 4Å: Chain D: K.16, T.17, T.34, D.53, V.54, G.55 Ligands: GDP.1, MG.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain D: K.16, T.17 Ligands: GDP.1, BEF.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, M.Y. et al., Structural basis for the ARF GAP activity and specificity of the C9orf72 complex. Nat Commun (2021)

Release Date

2021-06-23

Peptides

WD repeat-containing protein 41: A
Guanine nucleotide exchange protein SMCR8: B
Guanine nucleotide exchange C9orf72: C
ADP-ribosylation factor 1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

WD repeat-containing protein 41

Guanine nucleotide exchange protein SMCR8

Guanine nucleotide exchange C9orf72

ADP-ribosylation factor 1

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