SMTL ID : 7mgt.1

Ftp from Treponema pallidum bound to an ADP-like inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 8 residues within 4Å: Chain A: A.191, S.269, D.313, A.314, A.316, T.317 Ligands: MG.2, ZD4.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:A.191, A:D.313, A:D.313, A:T.317 MG.2: 6 residues within 4Å: Chain A: A.191, K.194, V.267, D.313 Ligands: MG.1, ZD4.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.313, H2O.1, H2O.2, H2O.4

1 x ZD4: 2-chloroadenosine 5'-(trihydrogen diphosphate)(Non-covalent)

ZD4.3: 22 residues within 4Å: Chain A: T.125, F.126, N.127, P.128, L.130, V.134, D.188, G.190, A.191, K.194, S.269, E.273, R.274, H.285, I.286, I.287, P.289, D.313, T.317, V.321 Ligands: MG.1, MG.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.127, A:D.188, A:S.269, A:S.269, A:I.287, A:I.287 Water bridges: A:G.190, A:A.191, A:K.194, A:R.274, A:H.285, A:H.285 Salt bridges: A:K.194, A:H.285, A:H.285

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 9 residues within 4Å: Chain A: I.46, E.78, L.81, S.82, A.83, G.190, A.193, K.194, L.197 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.83, A:A.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deka, R.K. et al., Inhibition of bacterial FMN transferase: A potential avenue for countering antimicrobial resistance. Protein Sci. (2022)

Release Date

2021-12-08

Peptides

FAD:protein FMN transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FAD:protein FMN transferase