SMTL ID : 7mh7.1

crystal structure of NAD kinase from Pseudomonas aeruginosa PAO1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 22 residues within 4Å: Chain A: D.72, G.73, L.76, R.94, F.99, N.146, D.147, T.184, T.187, A.188, Y.189, S.192, D.245, Q.247, K.284 Chain C: T.156, R.157, M.158, K.174, D.176, Y.211, H.213 23 PLIP interactions: 14 interactions with chain A, 9 interactions with chain C Hydrogen bonds: A:D.72, A:G.73, A:N.146, A:D.147, A:T.184, A:T.187, A:Y.189, A:S.192, A:D.245, A:Q.247, C:M.158, C:K.174, C:K.174, C:D.176, C:Y.211 Water bridges: A:D.147, C:R.157, C:R.157 Salt bridges: A:R.94, A:K.284, C:R.157, C:R.157 pi-Stacking: A:Y.189 NAP.2: 22 residues within 4Å: Chain B: D.72, G.73, L.76, R.94, F.99, N.146, D.147, T.184, T.187, A.188, Y.189, S.192, D.245, Q.247, K.284 Chain D: T.156, R.157, M.158, K.174, D.176, Y.211, H.213 23 PLIP interactions: 14 interactions with chain B, 9 interactions with chain D Hydrogen bonds: B:D.72, B:G.73, B:N.146, B:D.147, B:T.184, B:T.187, B:Y.189, B:S.192, B:D.245, B:Q.247, D:M.158, D:K.174, D:K.174, D:D.176, D:Y.211 Water bridges: B:D.147, D:R.157, D:R.157 Salt bridges: B:R.94, B:K.284, D:R.157, D:R.157 pi-Stacking: B:Y.189 NAP.3: 22 residues within 4Å: Chain A: T.156, R.157, M.158, K.174, D.176, Y.211, H.213 Chain C: D.72, G.73, L.76, R.94, F.99, N.146, D.147, T.184, T.187, A.188, Y.189, S.192, D.245, Q.247, K.284 23 PLIP interactions: 9 interactions with chain A, 14 interactions with chain C Hydrogen bonds: A:M.158, A:K.174, A:K.174, A:D.176, A:Y.211, C:D.72, C:D.72, C:G.73, C:N.146, C:D.147, C:T.184, C:Y.189, C:S.192, C:D.245, C:Q.247 Water bridges: A:R.157, A:R.157, C:A.190 Salt bridges: A:R.157, A:R.157, C:R.94, C:K.284 pi-Stacking: C:Y.189 NAP.4: 22 residues within 4Å: Chain B: T.156, R.157, M.158, K.174, D.176, Y.211, H.213 Chain D: D.72, G.73, L.76, R.94, F.99, N.146, D.147, T.184, T.187, A.188, Y.189, S.192, D.245, Q.247, K.284 23 PLIP interactions: 14 interactions with chain D, 9 interactions with chain B Hydrogen bonds: D:D.72, D:D.72, D:G.73, D:N.146, D:D.147, D:T.184, D:Y.189, D:S.192, D:D.245, D:Q.247, B:M.158, B:K.174, B:K.174, B:D.176, B:Y.211 Water bridges: D:A.190, B:R.157, B:R.157 Salt bridges: D:R.94, D:K.284, B:R.157, B:R.157 pi-Stacking: D:Y.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of NAD kinase from Pseudomonas aeruginosa. To Be Published

Release Date

2021-04-21

Peptides

NAD kinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

NAD kinase