SMTL ID : 7mjc.1

Crystal Structure Analysis of ALDH1B1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 28 residues within 4Å: Chain A: I.163, I.164, P.165, W.166, N.167, M.172, K.190, A.192, E.193, G.223, P.224, G.227, A.228, F.241, T.242, G.243, S.244, V.247, L.250, I.251, E.266, L.267, G.268, C.300, E.397, F.399, L.425, F.463 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:T.242 Hydrogen bonds: A:I.164, A:K.190, A:E.193, A:S.244, A:E.266, A:E.397 NAD.3: 29 residues within 4Å: Chain B: I.163, I.164, P.165, W.166, N.167, M.172, W.175, K.190, V.191, A.192, E.193, G.223, P.224, G.227, A.228, F.241, T.242, G.243, S.244, V.247, L.250, E.266, L.267, G.268, C.300, E.397, F.399, L.425, F.463 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:P.165, B:T.242 Hydrogen bonds: B:I.164, B:K.190, B:E.193, B:S.244, B:E.266, B:L.267, B:E.397

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: T.37, V.38, D.107, Q.194 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.38, A:D.107 NA.4: 4 residues within 4Å: Chain B: T.37, V.38, D.107, T.195 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.37, B:T.37, B:V.38, B:D.107, B:T.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fernandez, D., Inhibitors targeted to aldehyde dehydrogenase. Nat.Chem.Biol. (2022)

Release Date

2022-06-08

Peptides

Aldehyde dehydrogenase X, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aldehyde dehydrogenase X, mitochondrial

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