SMTL ID : 7mjs.1

Single-Particle Cryo-EM Structure of Major Facilitator Superfamily Domain containing 2A in complex with LPC-18:3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZGS: [(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] (9~{Z},12~{Z},15~{Z})-octadeca-9,12,15-trienoate(Non-covalent)

ZGS.1: 13 residues within 4Å: Chain C: F.60, M.182, T.183, V.186, F.308, E.312, M.337, I.344, Q.348, V.395, F.399, L.400, W.403 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:F.60, C:F.60, C:E.312, C:V.395, C:V.395, C:F.399

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain C: N.227, T.229 No protein-ligand interaction detected (PLIP) NAG.3: 6 residues within 4Å: Chain A: Y.57 Chain C: E.216, N.218, S.220, V.221, R.224 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:V.221 Hydrogen bonds: C:E.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cater, R.J. et al., Structural basis of omega-3 fatty acid transport across the blood-brain barrier. Nature (2021)

Release Date

2021-06-16

Peptides

2AG3 Fab heavy chain: A
2AG3 Fab light chain: B
Major Facilitator Superfamily Domain containing 2A: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
X

Membrane

We predict this structure to be a membrane protein.
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2AG3 Fab heavy chain

2AG3 Fab light chain

Major Facilitator Superfamily Domain containing 2A