SMTL ID : 7mlz.1

Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody B1-182.1 that targets the receptor-binding domain

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 3 residues within 4Å: Chain A: G.9, N.13, S.43 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, L. et al., Ultrapotent antibodies against diverse and highly transmissible SARS-CoV-2 variants. Science (2021)

Release Date

2021-07-28

Peptides

Spike protein S1: A
B1-182.1 Fab heavy chain: B
B1-182.1 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike protein S1

B1-182.1 Fab heavy chain

B1-182.1 Fab light chain

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