SMTL ID : 7mn0.1

N74D mutant of the HIV-1 capsid protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-hexamer

Ligands

36 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: R.18 Chain E: P.17 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: R.18 Chain E: P.17, N.21 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: E.35, R.173 Chain E: Q.63 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: I.37, P.38, S.41 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: A.92, Q.95 Ligand excluded by PLIP IOD.6: 4 residues within 4Å: Chain A: M.144 Chain F: R.162, M.215, Q.219 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain B: R.18 Chain F: P.17 Ligand excluded by PLIP IOD.8: 3 residues within 4Å: Chain B: R.18 Chain F: P.17, N.21 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain B: E.35, R.173 Chain F: Q.63 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain B: I.37, P.38, S.41 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain B: A.92, Q.95 Ligand excluded by PLIP IOD.12: 4 residues within 4Å: Chain B: M.144 Chain D: R.162, M.215, Q.219 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain C: R.18 Chain D: P.17 Ligand excluded by PLIP IOD.14: 3 residues within 4Å: Chain C: R.18 Chain D: P.17, N.21 Ligand excluded by PLIP IOD.15: 3 residues within 4Å: Chain C: E.35, R.173 Chain D: Q.63 Ligand excluded by PLIP IOD.16: 3 residues within 4Å: Chain C: I.37, P.38, S.41 Ligand excluded by PLIP IOD.17: 2 residues within 4Å: Chain C: A.92, Q.95 Ligand excluded by PLIP IOD.18: 4 residues within 4Å: Chain C: M.144 Chain E: R.162, M.215, Q.219 Ligand excluded by PLIP IOD.19: 2 residues within 4Å: Chain B: P.17 Chain D: R.18 Ligand excluded by PLIP IOD.20: 3 residues within 4Å: Chain B: P.17, N.21 Chain D: R.18 Ligand excluded by PLIP IOD.21: 3 residues within 4Å: Chain B: Q.63 Chain D: E.35, R.173 Ligand excluded by PLIP IOD.22: 3 residues within 4Å: Chain D: I.37, P.38, S.41 Ligand excluded by PLIP IOD.23: 2 residues within 4Å: Chain D: A.92, Q.95 Ligand excluded by PLIP IOD.24: 4 residues within 4Å: Chain C: R.162, M.215, Q.219 Chain D: M.144 Ligand excluded by PLIP IOD.25: 2 residues within 4Å: Chain C: P.17 Chain E: R.18 Ligand excluded by PLIP IOD.26: 3 residues within 4Å: Chain C: P.17, N.21 Chain E: R.18 Ligand excluded by PLIP IOD.27: 3 residues within 4Å: Chain C: Q.63 Chain E: E.35, R.173 Ligand excluded by PLIP IOD.28: 3 residues within 4Å: Chain E: I.37, P.38, S.41 Ligand excluded by PLIP IOD.29: 2 residues within 4Å: Chain E: A.92, Q.95 Ligand excluded by PLIP IOD.30: 4 residues within 4Å: Chain A: R.162, M.215, Q.219 Chain E: M.144 Ligand excluded by PLIP IOD.31: 2 residues within 4Å: Chain A: P.17 Chain F: R.18 Ligand excluded by PLIP IOD.32: 3 residues within 4Å: Chain A: P.17, N.21 Chain F: R.18 Ligand excluded by PLIP IOD.33: 3 residues within 4Å: Chain A: Q.63 Chain F: E.35, R.173 Ligand excluded by PLIP IOD.34: 3 residues within 4Å: Chain F: I.37, P.38, S.41 Ligand excluded by PLIP IOD.35: 2 residues within 4Å: Chain F: A.92, Q.95 Ligand excluded by PLIP IOD.36: 4 residues within 4Å: Chain B: R.162, M.215, Q.219 Chain F: M.144 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Selyutina, A. et al., TRIM5alpha Restriction of HIV-1-N74D Viruses in Lymphocytes Is Caused by a Loss of Cyclophilin A Protection. Viruses (2022)

Release Date

2022-05-04

Peptides

capsid protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

capsid protein

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